PmiREN: Plant microRNA Encyclopedia

Sbi-MIR171e

Basic info.

miRNA locus ID
Sbi-MIR171e

miRNA locus accession
PmiREN020026

Organism
Sorghum bicolor

Genomic location
Sbi-chromosome_6 61633950 61634075 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

         G      GACG      C         T             - T   -TGC     GTCT
      GGA GAAGAA    ACATGG GTGGTATTG TTCGGCTCATGTC C TCT    TTCGA    
      ||| ||||||    |||||| ||||||||| ||||||||||||| | |||    |||||     
      CTT CTTCTT    TGTACT CACTATAAC AAGCCGAGTGTAG G AGG    AGGCT    
AAAAGT   A      ---A      -         C             T T   TTTT     GCTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
SbRio.02G004900.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sbi-MIR171e

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