PmiREN: Plant microRNA Encyclopedia

Sbi-MIR171c

Basic info.

miRNA locus ID
Sbi-MIR171c

miRNA locus accession
PmiREN020029

Organism
Sorghum bicolor

Genomic location
Sbi-chromosome_2 19480152 19480267 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AGA   --   C       CA        A             TCATC   AGCAAAC
   ACG  AGA GACATGG  TGGTATTG CTTGGCTCATCTC     CAC       
   |||  ||| |||||||  |||||||| |||||||||||||     |||        
   TGC  TCT CTGTACT  ACTATAAC GAGCCGAGTGGAG     GTG       
      GA   A       TC        C             --TCC   AACACTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
SbRio.01G456600.1	0.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Sbi-MIR171c

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