PmiREN: Plant microRNA Encyclopedia

Spo-MIR171a

Basic info.

miRNA locus ID
Spo-MIR171a

miRNA locus accession
PmiREN020159

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo1 4496191 4496311 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   CTC     C  CT    T         C       T       GC     ---ACC   CTC
      TGAAA GG  ACTG GATGTTGGC CGGCTCA TCAGACG  GATCC      GGA   
      ||||| ||  |||| ||||||||| ||||||| |||||||  |||||      |||    
      ACTTT CC  TGAT CTATAACCG GCCGAGT AGTCTGC  TTGGG      CCT   
CCGCAA     -  CT    T         T       T       --     ACTCAC   TCA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo16G0012200	0.5	NA	NA
Spipo1G0080100	0.5	0	NA
Spipo2G0100900	1.5	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR171a

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