PmiREN: Plant microRNA Encyclopedia

Spo-MIR171b

Basic info.

miRNA locus ID
Spo-MIR171b

miRNA locus accession
PmiREN020160

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo2 8114092 8114220 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AATGCTTGGTGAA   A         G                TCAAG  G       AAGGG
               AGT TGGTGTTGG ATGGCTCAATCAGACT     TC TCCTCCC     
               ||| ||||||||| ||||||||||||||||     || |||||||     T
               TCA ACTATAACC TGCCGAGTTAGTCTGG     GG AGGGGGG     
TGGCCGCTTCGCTCA   C         G                TCTGG  G       GAAGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo16G0012200	0.5	NA	NA
Spipo1G0080100	0.5	0	NA
Spipo2G0100900	1.5	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR171b

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