Spo-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  CAGAGAGATGGCGGA  A         C             A      G    AGAAGGCA   GA
                 CG GATATTGGT CGGTTCAATCAGA GGCAGG CCTC        CGC  
                 || ||||||||| ||||||||||||| |||||| ||||        |||   
                 GC CTATAACCG GCCGAGTTAGTTT CCGTCC GGGG        GCG  
CTCCAACGCCGGCCGAC  A         T             G      G    --------   GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Spipo16G0012200 0.5 NA NA
Spipo1G0080100 0.5 0 NA
Spipo2G0100900 1.5 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference