PmiREN: Plant microRNA Encyclopedia

Spo-MIR171d

Basic info.

miRNA locus ID
Spo-MIR171d

miRNA locus accession
PmiREN020162

Organism
Spirodela polyrhiza

Genomic location
Spo-pseudo12 240165 240286 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TGATCCACGGC   G     C       C            C  T   G GT       G
             GGA AGGAG GATATTG CGTGGTTCAATC GA GAT G  TTACGAG 
             ||| ||||| ||||||| |||||||||||| || ||| |  ||||||| A
             CTT TTCTC CTATAAC GCGCCGAGTTAG CT CTA C  AATGCTC 
ACCTCTCTCTCTT   G     A       C            A  -   A GT       A

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Spipo16G0012200	1.0	NA	NA
Spipo1G0080100	1.0	1	NA
Spipo2G0100900	2.0	1	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Spo-MIR171d

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