PmiREN: Plant microRNA Encyclopedia

Vun-MIR171b

Basic info.

miRNA locus ID
Vun-MIR171b

miRNA locus accession
PmiREN020253

Organism
Vigna unguiculata

Genomic location
Vun-MATU01093673.1 702 818 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TAACCATTT    ATTT          T           A  C    TT    GAGA
           GATC    TGATGTTGGC TGGCTCAATCA AT AAAG  CTTA    
           ||||    |||||||||| ||||||||||| || ||||  ||||    T
           TTAG    ACTATAACCG GCCGAGTTAGT TG TTTC  GAGT    
TTATCTTCTAC    ACTC          T           C  A    TT    AGGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Vigun05g163700.1	0.5	NA	NA
Vigun10g103500.1	0.5	NA	NA
Vigun10g103700.1	0.5	NA	NA
Vigun02g134400.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Vun-MIR171b

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