PmiREN: Plant microRNA Encyclopedia

Vun-MIR171c

Basic info.

miRNA locus ID
Vun-MIR171c

miRNA locus accession
PmiREN020254

Organism
Vigna unguiculata

Genomic location
Vun-MATU01206827.1 440 590 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

           T   T    T         C       C      ATGTGT    C      TTATGT     CCTAGA
   ATATGAAG AGT ATTG GATATTGGC TGGTTCA TCAGAC      ACCA ACACAC      CTTGC      
   |||||||| ||| |||| ||||||||| ||||||| ||||||      |||| ||||||      |||||       
   TGTACTTC TCG TGAC CTATAACCG GCCGAGT AGTTTG      TGGT TGTGTG      GAATG      
GTT        T   -    T         T       T      GGTTTT    C      ---TTT     TTACAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Vigun05g163700.1	0.5	NA	NA
Vigun10g103500.1	0.5	NA	NA
Vigun10g103700.1	0.5	NA	NA
Vigun02g134400.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Vun-MIR171c

>