PmiREN: Plant microRNA Encyclopedia

Vun-MIR171e

Basic info.

miRNA locus ID
Vun-MIR171e

miRNA locus accession
PmiREN020256

Organism
Vigna unguiculata

Genomic location
Vun-MATU01218496.1 110 235 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

GATA          ---A  -   C          A         C  A  -  -GA     A   AG
    TGGGAGGCAG    GA AAG GATGTTGGTG GGTTCAATC GA GA CG   TTTAC TGT  
    ||||||||||    || ||| |||||||||| ||||||||| || || ||   ||||| |||   
    ACCTTTCGTT    CT TTC CTATAACCGC CCGAGTTAG CT CT GC   AAATG ACG  
  CG          GTTA  A   A          G         A  -  A  ATA     -   AA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Vigun05g163700.1	1.0	NA	NA
Vigun10g103500.1	1.0	NA	NA
Vigun10g103700.1	1.0	NA	NA
Vigun02g134400.1	1.5	NA	NA
Vigun08g091300.1	2.0	1	NA
Vigun09g168400.1	2.0	NA	NA
Vigun09g168500.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Vun-MIR171e

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