PmiREN: Plant microRNA Encyclopedia

Vun-MIR171g

Basic info.

miRNA locus ID
Vun-MIR171g

miRNA locus accession
PmiREN020258

Organism
Vigna unguiculata

Genomic location
Vun-MATU01214571.1 549 664 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  AAT   C    TTA   G         C         GA       AT   CAAAAT
     GGA CGGT   ACG GATATTGGT CGGTTCAAT  GAAAGCA  GCT      
     ||| ||||   ||| ||||||||| |||||||||  |||||||  |||       
     CCT GTCA   TGC CTATAACCG GCCGAGTTA  TTTTCGT  CGG      
AAAAT   C    CCG   A         T         GC       CC   ACTCTG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Vigun05g163700.1	1.5	NA	NA
Vigun10g103500.1	1.5	NA	NA
Vigun10g103700.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Vun-MIR171g

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