PmiREN: Plant microRNA Encyclopedia

Vvi-MIR171a

Basic info.

miRNA locus ID
Vvi-MIR171a

miRNA locus accession
PmiREN020390

Organism
Vitis vinifera

Genomic location
Vvi-chr14 25491192 25491304 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  ATACTTGGTGGGA             G            AACC    AT     T
               AGCGTGATGTTGG ACGGCTCAATCA    AAAG  CTCAA 
               ||||||||||||| ||||||||||||    ||||  ||||| G
               TTGTACTATAACC TGCCGAGTTAGT    TTTC  GAGTT 
AGTAAACTTCATAAC             G            CTAA    CT     G

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
VIT_202s0154g00400.1	0.5	NA	NA
VIT_204s0023g01380.1	0.5	0	NA
VIT_215s0048g00270.1	0.5	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Vvi-MIR171a

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