PmiREN: Plant microRNA Encyclopedia

Vvi-MIR171b

Basic info.

miRNA locus ID
Vvi-MIR171b

miRNA locus accession
PmiREN020391

Organism
Vitis vinifera

Genomic location
Vvi-chr12 5542386 5542510 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

            A    TCAAATAT                   C       T  AG          -  GAA
           G GTGT        GGGGGGAGGTATTGGCGTG CTCAATT AA  ACATGGTTAG AT   
           | ||||        ||||||||||||||||||| ||||||| ||  |||||||||| ||    
           C CACG        TTTTCCTCTATAACTGCGC GAGTTAG TT  TGTACCGATT TA   
CCTCTTTCTCT -    --------                   C       T  AG          A  GAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
VIT_202s0154g00400.1	1.0	NA	NA
VIT_215s0048g00270.1	1.0	NA	NA
VIT_204s0023g01380.1	1.5	1	NA
VIT_212s0059g00650.1	2.0	2	NA
VIT_217s0000g09495.1	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Vvi-MIR171b

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