Vvi-MIR171f

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  TGTTGGGGCATTGAAGA   C          A            A     A   A   TTG
                   AAG GATGTTGGTG GGTTCAATCTGA GATTG TTT TGC   
                   ||| |||||||||| |||||||||||| ||||| ||| |||    
                   TTC CTATAACCGC CCGAGTTAGACT CTAGT AAA ATG   
TTTGGAACCTCGGTGTCTT   A          G            -     C   A   TAA

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

VIT_202s0154g00400.1 1.0 NA NA
VIT_204s0023g01380.1 1.0 1 NA
VIT_215s0048g00270.1 1.0 NA NA
VIT_212s0059g00650.1 2.0 2 NA
VIT_218s0001g03310.1 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference