PmiREN: Plant microRNA Encyclopedia

Vvi-MIR171k

Basic info.

miRNA locus ID
Vvi-MIR171k

miRNA locus accession
PmiREN020400

Organism
Vitis vinifera

Genomic location
Vvi-chrUn 19112177 19112310 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   GC      T  CT   GC         C       C      A     -       ACACTTCCAAA
     ATGAAA GG  GCT  GATATTGGC CGGTTCA TCAGAT CAGGA TACACCT           
     |||||| ||  |||  ||||||||| ||||||| |||||| ||||| |||||||            
     TACTTT CC  TGA  CTATAACCG GCCGAGT AGTTTA GTTTT ATGTGGA           
ATCTT      C  -T   GT         T       T      -     C       AAAAAAAAAAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
VIT_202s0154g00400.1	0.5	NA	NA
VIT_204s0023g01380.1	0.5	0	NA
VIT_215s0048g00270.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Vvi-MIR171k

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