PmiREN: Plant microRNA Encyclopedia

Vvi-MIR403f

Basic info.

miRNA locus ID
Vvi-MIR403f

miRNA locus accession
PmiREN020485

Organism
Vitis vinifera

Genomic location
Vvi-chr7 4179663 4179790 -

Comments
A member of family MIR403

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CTCATGAGGATGAGATGAG              C     A    CCT  TCTAAACCTTTTCC
                     GAGTTTGTGCGTGA TCTAA ACCG   GA              
                     |||||||||||||| ||||| ||||   ||              C
                     CTCAAACACGCACT AGATT TGGT   CT              
CCTTTACTTTTCTGTCTAATG              T     C    -AT  TTTCCATAGCGTAG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
VIT_207s0005g01690.1	1.5	NA	NA

Mature miRNA conservation

Link

Reference

>The Role of UV-B light on Small RNA Activity During Grapevine Berry Development. G3, 2019