Zma-MIR171a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  GGATGGCATGGAGGGAGC          A             ----G      TTTTCTTATATATAAA
                    GATATTGGCG GGTTCAATCAGAT     ATGTAT                
                    |||||||||| |||||||||||||     ||||||                T
                    CTATAACCGC CCGAGTTAGTCTG     TAAGTG                
TTGAATACCACCTTCCTTCA          G             TGACC      TGGAAGTACGTACGTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GRMZM2G037792_T01 0.0 NA 0 (2)
GRMZM2G051785_T01 0.0 NA 0 (1)
GRMZM2G098800_T02 0.0 NA 0 (2)
GRMZM2G110579_T01 0.0 NA 0 (1)
GRMZM2G317338_T01 0.0 0 0 (1)
GRMZM5G825321_T02 0.0 NA 0 (3)
GRMZM2G057091_T01 NA NA 2 (1)
GRMZM2G116952_T01 NA NA 2 (1)
GRMZM2G127632_T01 NA NA 2 (1)
GRMZM5G805387_T03 NA NA 2 (1)
GRMZM2G418899_T01 0.0 NA 4 (1)
AC187788.3_FGT008 0.5 0 NA
GRMZM2G011947_T01 0.5 NA NA
GRMZM2G079470_T01 0.5 NA NA
GRMZM2G176124_T01 0.5 0 NA
GRMZM2G118913_T01 1.5 2 NA
GRMZM5G876576_T01 1.5 NA NA
GRMZM2G117949_T01 2.0 NA NA
GRMZM2G124449_T01 2.0 1 NA
GRMZM2G477666_T01 2.0 1 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference