Zma-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
CCTACGAC  A   ---   G                       A  CTT C     AGGC
        CT GCC   ACG GATATTGGCGCGGTTCAATCAGA AG   G GCTCC    
        || |||   ||| ||||||||||||||||||||||| ||   | |||||     
        GA CGG   TGC CTATAACCGTGCCGAGTTAGTTT TC   C CGGGG    
 TTATTTC  C   CCC   A                       C  -AC T     AGCC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GRMZM2G045005_T04 5.0 NA 2 (1)
GRMZM2G168629_T01 NA NA 2 (1)
GRMZM5G896560_T01 NA NA 2 (1)
GRMZM5G876576_T01 0.0 NA NA
GRMZM2G037792_T01 0.5 NA NA
GRMZM2G051785_T01 0.5 NA NA
GRMZM2G098800_T02 0.5 NA NA
GRMZM2G110579_T01 0.5 NA NA
GRMZM2G317338_T01 0.5 0 NA
GRMZM2G418899_T01 0.5 NA NA
GRMZM5G825321_T02 0.5 NA NA
AC187788.3_FGT008 1.0 0 NA
GRMZM2G011947_T01 1.0 NA NA
GRMZM2G079470_T01 1.0 NA NA
GRMZM2G176124_T01 1.0 0 NA
GRMZM2G521781_T01 1.0 0 NA
GRMZM2G118913_T01 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference