Zma-MIR171c

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
     G  T    -AACCT   G                 A     A  CTT C     AAAG
 TGGG AA CGAA      ACG GATATTGGTGCGGTTCA TCAGA AG   G GCTCC    
 |||| || ||||      ||| ||||||||||||||||| ||||| ||   | |||||     
 ACCC TT GTTT      TGC CTATAACCGTGCCGAGT AGTTT TC   C CGGGG    
T    G  C    CGCTCC   A                 C     C  -AC T     ACCC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GRMZM2G110579_T01 2.5 NA 2 (1)
GRMZM2G317338_T01 2.5 NA 2 (2)
GRMZM2G132519_T01 4.0 NA 2 (1)
GRMZM2G067743_T03 NA NA 2 (1)
GRMZM2G069174_T04 NA NA 2 (1)
GRMZM2G106250_T01 NA NA 2 (1)
GRMZM2G126190_T01 NA NA 2 (1)
GRMZM2G126594_T02 NA NA 2 (1)
GRMZM2G300500_T01 NA NA 2 (1)
GRMZM2G417255_T01 NA NA 2 (1)
GRMZM5G811797_T05 NA NA 2 (1)
GRMZM5G876576_T01 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference