Zma-MIR171i

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GGTT    -     A  - C                      ---A   -  GG
    GGCT GAGAG GT G GATGTTGGCACGGTTCAATCAA    TCG CC  
    |||| ||||| || | ||||||||||||||||||||||    ||| ||  C
    CCGA CTCTT CA C CTATAACCGTGCCGAGTTAGTT    AGT GG  
GGAT    T     C  A A                      GTTC   T  GC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GRMZM5G876576_T01 0.0 NA NA
GRMZM2G037792_T01 0.5 NA NA
GRMZM2G051785_T01 0.5 NA NA
GRMZM2G098800_T02 0.5 NA NA
GRMZM2G110579_T01 0.5 NA NA
GRMZM2G317338_T01 0.5 0 NA
GRMZM2G418899_T01 0.5 NA NA
GRMZM5G825321_T02 0.5 NA NA
AC187788.3_FGT008 1.0 0 NA
GRMZM2G011947_T01 1.0 NA NA
GRMZM2G079470_T01 1.0 NA NA
GRMZM2G176124_T01 1.0 0 NA
GRMZM2G521781_T01 1.0 0 NA
GRMZM2G118913_T01 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference