Zma-MIR171l

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
                GATTGGGGGAAGCTGCTGATTGAGCCGCGCCAATATCTCTCGCGCGCCGATGGAGTTGCCGACCTCAGCCGCCATTGCCGCCGCAGCAAGCTCGTCCAGGAGCT
               C                                                                                                        
               |                                                                                                        G
               G                                                                                                        
GGCGGCAGCGTCCCA ATGGTAAGGGCGGTGACGTATGGTGGTGCGGGAAGGTCGAGGTCGGTGGTGACGTTGGCGGCGCCCCTCGCTACTTTTGTTGGGGCCGCCGCGTCGTTGTAGTT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

GRMZM5G882351_T01 5.0 2 2 (1)
GRMZM2G019721_T02 NA NA 2 (1)
GRMZM2G056989_T01 NA NA 2 (1)
GRMZM2G059117_T01 NA NA 2 (1)
GRMZM2G101711_T02 NA NA 2 (1)
GRMZM2G151726_T03 NA NA 2 (1)
GRMZM2G465133_T01 NA NA 2 (1)
GRMZM5G854473_T01 NA NA 2 (1)
GRMZM5G866334_T01 NA NA 2 (1)
GRMZM5G869004_T01 NA 2 2 (1)
AC187788.3_FGT008 0.0 0 NA
GRMZM2G011947_T01 0.0 NA NA
GRMZM2G037792_T01 0.0 NA NA
GRMZM2G051785_T01 0.0 NA NA
GRMZM2G079470_T01 0.0 NA NA
GRMZM2G098800_T02 0.0 NA NA
GRMZM2G176124_T01 0.0 0 NA
GRMZM2G418899_T01 0.0 NA NA
GRMZM5G825321_T02 0.0 NA NA
GRMZM2G060265_T01 1.0 NA NA
GRMZM2G110579_T01 1.0 NA NA
GRMZM2G317338_T01 1.0 1 NA
GRMZM2G124449_T01 1.5 1 NA
GRMZM2G477666_T01 1.5 1 NA
GRMZM2G111191_T01 2.0 NA NA
GRMZM2G118913_T01 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference