PmiREN: Plant microRNA Encyclopedia

Zos-MIR171a

Basic info.

miRNA locus ID
Zos-MIR171a

miRNA locus accession
PmiREN024299

Organism
Zostera marina

Genomic location
Zos-scaffold_10 448081 448195 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CTTGTTCTTACACA   C         C              AA   G   ATATA
                ATG GGTGTTGGT CGGTTCAATCAGAT  CAT GGT     
                ||| ||||||||| ||||||||||||||  ||| |||     G
                TAC CTATAACCG GCCGAGTTAGTTTA  GTG CCA     
AATAGCACTTACTTAA   A         T              GC   G   AGGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Zosma26g01250.1	0.0	NA	NA
Zosma85g00610.1	0.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Zos-MIR171a

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