PmiREN: Plant microRNA Encyclopedia

Vvi-MIR164b

Basic info.

miRNA locus ID
Vvi-MIR164b

miRNA locus accession
PmiREN024367

Organism
Vitis vinifera

Genomic location
Vvi-chr9 514750 514862 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TAAA   T CT     AG           CT     AA    CACC
      CCA G  GGAGA  CAGGGCACATG  GGATC  TCAG    
      ||| |  |||||  |||||||||||  |||||  ||||    T
      GGT C  CCTCT  GTCCCGTGTAC  TTTAG  AGTC    
ATCCTA   T AC     CG           AT     --    TAGG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
VIT_217s0000g06400.2	1.0	NA	NA
VIT_219s0027g00230.1	1.5	0	NA

Mature miRNA conservation

Link

Reference

No reference

Vvi-MIR164b

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