PmiREN: Plant microRNA Encyclopedia

Cme-MIR171h

Basic info.

miRNA locus ID
Cme-MIR171h

miRNA locus accession
PmiREN024390

Organism
Cucumis melo

Genomic location
Cme-NW_007546304.1 1704449 1704614 +

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      TGA             T       T     -G         TAAT   TG    -AA       GAAA
         AGGTATTGACGTG CTCAATT GAAAG  TACATGGTT    GTT  CTAA   AAATTGG    
         ||||||||||||| ||||||| |||||  |||||||||    |||  ||||   |||||||     
         TCTATAACTGCGC GAGTTAG CTTTT  GTGTGCCGA    CGG  GATT   TTTAATT    
AAACTCTTC             C       T     GT         --TT   --    GTG       ATTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
XM_008450640.2	1.0	NA	NA
XM_008459909.2	1.0	NA	NA
NR_120740.1	2.0	2	NA

Mature miRNA conservation

Link

Reference

No reference

Cme-MIR171h

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