Gbi-MIR171a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
AG   AA        -T     -----        A   - CA  G    A  A          TGTAC   TT    TT    -C   -TC   C  AATCAATA
  GTG  GCTGAAGA  GGGAT     GTGATATT GAT C  CT AACT GA CAAATAAAGA     AAC  TCTG  TGAT  AAG   GAG CA        
  |||  ||||||||  |||||     |||||||| ||| |  || |||| || ||||||||||     |||  ||||  ||||  |||   ||| ||         
  TAC  TGACTTCT  CTCTA     CACTATAA CTA G  GA TTGG TT GTTTGTTTTT     TTG  AGAC  ACTG  TTC   CTC GT        
     --        TT     TGTTT        -   A CC  G    A  A          TTTTT   --    CT    AC   TTC   T  CTCTCACT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Gb_05547 1.0 NA 0 (1)
Gb_28344 4.5 NA 2 (1)
Gb_06624 NA NA 2 (1)
Gb_12483 NA NA 2 (1)
Gb_25709 0.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference