PmiREN: Plant microRNA Encyclopedia

Gbi-MIR171b

Basic info.

miRNA locus ID
Gbi-MIR171b

miRNA locus accession
PmiREN024657

Organism
Ginkgo biloba

Genomic location
Gbi-scaffold4641 2928743 2928863 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  CCAGATTTCAATTT      A                     T  A   CT      AA
                GTGTTG GATATTGGTGCGGTTCAACCT AC GCA  GTTTAG  
                |||||| ||||||||||||||||||||| || |||  ||||||  A
                CACAAC CTATAACCGTGCCGAGTTGGA TG TGT  CAAGTC  
CCAGTCCTTGCACCAC      A                     T  C   TT      GT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Gb_28344	1.5	NA	2 (1)
Gb_19024	2.0	2	NA
Gb_25709	2.0	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Gbi-MIR171b

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