PmiREN: Plant microRNA Encyclopedia

Gbi-MIR171c

Basic info.

miRNA locus ID
Gbi-MIR171c

miRNA locus accession
PmiREN024658

Organism
Ginkgo biloba

Genomic location
Gbi-scaffold4641 1314571 1314691 -

Comments
A member of family MIR171

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   -C   TCAA  T    --    A            C          AG   TT      GG
  G  AGA    GT TGGA  AAGG GATATTGACGTG CTCAATTTGA  ACA  GTTAGA  
  |  |||    || ||||  |||| |||||||||||| ||||||||||  |||  ||||||  A
  C  TCT    CA ATCT  TTCC CTATAACTGCGC GAGTTAGGCT  TGT  CGATCT  
CT CA   ---C  C    AC    C            C          CG   CT      TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
Gb_22820	NA	NA	2 (1)
Gb_36633	NA	NA	2 (1)
Gb_28344	1.5	NA	NA

Mature miRNA conservation

Link

No link
No link

Reference

No reference

Gbi-MIR171c

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