Tae-MIR171n

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
GAAA    -    CG     -C        T             C     GA  AC
    GAAG AAGA  ACATG  TGGTATTG TTCGGCTCATGTC TCGTC  GC  
    |||| ||||  |||||  |||||||| ||||||||||||| |||||  ||  A
    CTTC TTCT  TGTAC  ACTATAAC AAGCCGAGTGTAG AGTAG  TG  
GAGA    C    TA     TC        C             -     GC  CT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Traes_6DS_A7F86156A.1 NA NA 0 (1)
Traes_7BL_870E640C5.1 NA NA 1 (1)
Traes_1BL_325A2C8C0.1 NA NA 2 (1)
Traes_1BL_D0A3F2067.4 NA NA 2 (1)
Traes_1BL_DF78E98F6.1 NA NA 2 (2)
Traes_2DS_92C72B121.1 NA NA 2 (1)
Traes_6AL_5FC1FDFA8.2 NA 2 2 (1)
Traes_6AL_D51D8E06E.1 NA NA 2 (1)
TraesCS1D02G207000.1 2.0 NA NA
TraesCS1D02G207000.2 2.0 NA NA
TraesCS2A02G149500.1 2.0 NA NA
TraesCS2A02G149500.2 2.0 NA NA
TraesCS2B02G174600.1 2.0 NA NA
TraesCS2D02G154600.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference