Tae-MIR171a

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
            T  T    AT         T  A    C     -    -   TGCCGGCCGGCCGTAG
       TGGAA GG CACT  GATGTTGGC CG CTCA TCAGA CCAC GCC                
       ||||| || ||||  ||||||||| || |||| ||||| |||| |||                 
       ACTTT TC GTGA  CTATAACCG GC GAGT AGTCT GGTG TGG                
CGTACGT     C  -    CT         T  C    T     C    G   CGTACGTCTACGTACC

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Traes_6DL_26DDCA106.1 NA 0 1 (1)
Traes_2BL_148046057.1 NA NA 2 (1)
TraesCS4B02G367300.1 0.0 NA NA
TraesCS4D02G062300.1 0.0 NA NA
TraesCS4D02G360200.1 0.0 NA NA
TraesCS5A02G535000.1 0.0 NA NA
TraesCS4A02G482000.1 0.5 NA NA
TraesCS6A02G247200.1 0.5 NA NA
TraesCS6B02G277400.1 0.5 NA NA
TraesCS6D02G229400.1 0.5 NA NA
TraesCS7A02G014200.1 0.5 NA NA
TraesCS7D02G011400.1 0.5 NA NA
TraesCS1A02G209400.1 1.0 NA NA
TraesCS1B02G223400.1 1.0 NA NA
TraesCS1D02G212800.1 1.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference