Tae-MIR171b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TCC     --GGG   T  A    --                   A   A CT  C     AGGA
   TGCGA     GAG GA CGCG  GTATTGGTGCGGTTCAATC GAG G  GG GCCCC    
   |||||     ||| || ||||  ||||||||||||||||||| ||| |  || |||||    G
   ACGCT     CTC TT GCGC  TATAACCGTGCCGAGTTAG TTC C  CC TGGGG    
  T     AAGTA   T  G    AC                   C   - CT  T     AACG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Traes_6DL_26DDCA106.1 NA 1 1 (3)
Traes_4DL_D6D553E47.1 NA NA 2 (1)
Traes_5DL_A779EBA93.1 NA NA 2 (1)
TraesCS4B02G367300.1 1.0 NA NA
TraesCS4D02G062300.1 1.0 NA NA
TraesCS4D02G360200.1 1.0 NA NA
TraesCS5A02G535000.1 1.0 NA NA
TraesCS4A02G482000.1 1.5 NA NA
TraesCS6A02G247200.1 1.5 NA NA
TraesCS6B02G277400.1 1.5 NA NA
TraesCS6D02G229400.1 1.5 NA NA
TraesCS7A02G014200.1 1.5 NA NA
TraesCS7D02G011400.1 1.5 NA NA
TraesCS4A02G088500.1 2.0 NA NA
TraesCS4B02G215700.1 2.0 NA NA
TraesCS4D02G216200.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference