Tae-MIR171v

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
TCCTGCGAGGG   T  A    --                   A   A CT  C     AGGA
           GAG GA CGCG  GTATTGGTGCGGTTCAATC GAG G  GG GCCCC    
           ||| || ||||  ||||||||||||||||||| ||| |  || |||||    G
           CTC TT GCGC  TATAACCGTGCCGAGTTAG TTC C  CC TGGGG    
TACGCTAAGTA   T  G    AC                   C   - CT  T     AACG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Traes_4BS_BAB1013EF.1 NA NA 1 (1)
Traes_2AL_BE2D14989.1 NA NA 2 (1)
Traes_2BL_2825A3D0F.1 NA NA 2 (1)
Traes_2BL_B17B085F9.1 NA NA 2 (1)
Traes_2DL_69EB061DB.1 NA NA 2 (1)
Traes_4AS_D9959802D.1 NA NA 2 (1)
Traes_5BL_4E837C0A6.1 NA NA 2 (1)
Traes_7BS_02AD36356.1 NA 2 2 (1)
TraesCS4B02G367300.1 1.0 NA NA
TraesCS4D02G062300.1 1.0 NA NA
TraesCS4D02G360200.1 1.0 NA NA
TraesCS5A02G535000.1 1.0 NA NA
TraesCS4A02G482000.1 1.5 NA NA
TraesCS6A02G247200.1 1.5 NA NA
TraesCS6B02G277400.1 1.5 NA NA
TraesCS6D02G229400.1 1.5 NA NA
TraesCS7A02G014200.1 1.5 NA NA
TraesCS7D02G011400.1 1.5 NA NA
TraesCS4A02G088500.1 2.0 NA NA
TraesCS4B02G215700.1 2.0 NA NA
TraesCS4D02G216200.1 2.0 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference