Tae-MIR171w

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
  ATG    A     A   C        G A         C    -AA    A    A     C  TCC
     GTGG TGGAG GAG GATATTGG G GGCTCAATC GATG   TGGG TTTA TTACG CG   
     |||| ||||| ||| |||||||| | ||||||||| ||||   |||| |||| ||||| ||    
     TACC ACTTC TTC CTATAACC C CCGAGTTAG CTAT   ATCC AAAT AATGC GC   
CTATA    A     C   A        G G         T    ACA    -    -     T  CTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Traes_4DL_D6D553E47.1 NA NA 2 (1)
TraesCS4A02G482000.1 0.0 NA NA
TraesCS6A02G247200.1 0.0 NA NA
TraesCS6B02G277400.1 0.0 NA NA
TraesCS6D02G229400.1 0.0 NA NA
TraesCS7A02G014200.1 0.0 NA NA
TraesCS7D02G011400.1 0.0 NA NA
TraesCS1A02G209400.1 0.5 NA NA
TraesCS1B02G223400.1 0.5 NA NA
TraesCS1D02G212800.1 0.5 NA NA
TraesCS4B02G367300.1 1.5 NA NA
TraesCS4D02G062300.1 1.5 NA NA
TraesCS4D02G360200.1 1.5 NA NA
TraesCS5A02G535000.1 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference