Csi-MIR171a

Basic info.

• miRNA locus ID
• Csi-MIR171a

• miRNA locus accession
• PmiREN028038

• Organism
• Camellia sinensis

• Genomic location
• Csi-NW_021025370.1  664497  664618  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

ACA   A G     -----TTG   TT   CC       -          TA   T  TTGTT  AT
   TAA A ACAGT        GGA  GAG  GCGCCAA TATTACTTTT  GTC GG     AC  
   ||| | |||||        |||  |||  ||||||| ||||||||||  ||| ||     ||   
   ATT T TGTTA        TCT  TTT  TGTGGTT GTGATGAAAA  TAG CC     TG  
      A G     TATTGATG   TT   TT       T          --   T  -TTGT  AG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference