Csi-MIR171c

Basic info.

• miRNA locus ID
• Csi-MIR171c

• miRNA locus accession
• PmiREN028040

• Organism
• Camellia sinensis

• Genomic location
• Csi-NW_021025523.1  1412588  1412705  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

            ACTAT  T   AT    GA                   T    C   TC     AA
          GA     CA AGT  TACG  ATATTGGTGCGGTTCAATT GAAA TAG  CTCTA  
          ||     || |||  ||||  ||||||||||||||||||| |||| |||  |||||   
          CT     GT TCA  ATGC  TATAACCGTGCCGAGTTAA TTTT ATC  GAGAT  
ACTAGTAGAT  -----  -   --    GC                   T    T   TA     AT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference