Cqu-MIR171a

Basic info.

• miRNA locus ID
• Cqu-MIR171a

• miRNA locus accession
• PmiREN028555

• Organism
• Chenopodium quinoa

• Genomic location
• Cqu-NW_018743391.1  1039923  1040055  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  TTTTGCAGGGG               T      C     C     -      T   -        T
             ATGAATATGTTTGTT ATGGTC TCTAA CATTA AGTCAT TTC GATATATT 
             ||||||||||||||| |||||| ||||| ||||| |||||| ||| |||||||| T
             TACTTGTACAAACAA TACCAG AGATT GTGAT TTGGTA AAG TTATATGA 
GTTCACGTTACTA               C      T     A     C      T   A        G

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference