Cqu-MIR171b

Basic info.

• miRNA locus ID
• Cqu-MIR171b

• miRNA locus accession
• PmiREN028556

• Organism
• Chenopodium quinoa

• Genomic location
• Cqu-NW_018745684.1  7503770  7503903  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  TTTCGCAGGAG            T   T      C     C   -GAAG    T     -     GT
             ATGAATATGTTT GTT ATGGTC TCTAA CAT     TCAT TTCTA TATAT  
             |||||||||||| ||| |||||| ||||| |||     |||| ||||| |||||  T
             TACTTGTACAAA CAA TACCAG AGATT GTG     GGTA AAGAT ATATG  
GTTCACGTTACTA            -   C      T     A   AAATT    T     T     GG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference