Ete-MIR171a

Basic info.

• miRNA locus ID
• Ete-MIR171a

• miRNA locus accession
• PmiREN029448

• Organism
• Eragrostis tef

• Genomic location
• Ete-scaffold3695  15855  16124  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

       G  AC  C   C      -GA      CC        ----TTC  -  CCTCTAGCGTTCCATGTTCCATCACTGTAAACTGGTAAGGTCATCTCCAAAAACTCTTGCTGTTTCCATTAGAAGCTTCTTCCTT
    ATT CA  GG AAC TGAGGT   GCCGAG  AATATCAC       AT GT                                                                                     
    ||| ||  || ||| ||||||   ||||||  ||||||||       || ||                                                                                      
    TGA GT  CC TTG ATTCTA   CGGTTC  TTATAGTG       GT GA                                                                                     
CCAT   G  --  T   T      ATA      TT        TTTAAAT  C  TATAGTCCATCCCGTAGTAAGAGGAACAAATAGAAGAAAGAAATTCCTAACCTCATTCGCCACGTGACACCACAGGCACCTTTGG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference