Mdo-MIR171c

Basic info.

• miRNA locus ID
• Mdo-MIR171c

• miRNA locus accession
• PmiREN030517

• Organism
• Malus domestica

• Genomic location
• Mdo-MDC007691.315  6052  6239  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

   AA      GCA      A         C      C       --TTCC    TTCCATCCATCTGCTGGCTTCAATATATAATTTGTGTTTGTA
     TTTGCA   GTGGAT TGTTTGTTG TGGTCA CTAGTTA      ATGG                                          
     ||||||   |||||| ||||||||| |||||| |||||||      ||||                                           
     GAACGT   TACTTA ACAAGCAAC ACCAGT GATTAGT      GGCG                                          
TTAAC      -AG      C         T      A       CTTGCA    GTACCCAGTTTATATGTTATGACGTACATATATATGTTGTAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference