Pav-MIR171a

Basic info.

• miRNA locus ID
• Pav-MIR171a

• miRNA locus accession
• PmiREN031744

• Organism
• Prunus avium

• Genomic location
• Pav-Pav_sc0000557.1.  187003  187129  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  TTGCAGGAGCA      A                    C    TC  CT   -     TT GGT
             GTGAAT TGTTTGTTGATGGTCATCTA TTAT  TG  TCA ATATT  T   
             |||||| |||||||||||||||||||| ||||  ||  ||| |||||  |    
             TACTTA ACAAACAACTACCAGTAGAT AGTA  AC  AGT TATAA  A   
TATATCTATATAG      C                    T    TT  --   A     TT ACA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference