Pdu-MIR171a

Basic info.

• miRNA locus ID
• Pdu-MIR171a

• miRNA locus accession
• PmiREN031924

• Organism
• Prunus dulcis

• Genomic location
• Pdu-pdulcis26_s0003  2268459  2268610  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

 TTC   --       G   T  T                  -A       ---   ------------------ACTTTT     ATA
    TGC  ACAAGTA ACA GG GTGATATTGGTTCGGTTC  TATCTTT   TGT                        TGGAT   
    |||  ||||||| ||| || ||||||||||||||||||  |||||||   |||                        |||||    
    ACG  TGTTCGT TGT TC CACTATAACTAAGCCGAG  GTAGAAA   ACA                        ACCTA   
ATGT   TT       A   -  T                  CA       CAA   CTAAGCACTTCAGACTACCTACCT     CCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference