Rsa-MIR171a

Basic info.

• miRNA locus ID
• Rsa-MIR171a

• miRNA locus accession
• PmiREN032076

• Organism
• Raphanus sativus

• Genomic location
• Rsa-Rsa1.0_00081.1  93547  93668  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

    GTAA      --AAC   A      A             A    --T   TA    TAGT
 GAT    TTTGGT     GCG GATATT GTGCGGTTCAATC AATA   TCG  CTCT    
 |||    ||||||     ||| |||||| ||||||||||||| ||||   |||  ||||     
 CTA    GAACCA     CGC CTATAA CGTGCCGAGTTAG TTGT   AGT  GAGA    
A   -GTA      AAATA   A      C             C    TTT   TA    TAGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference