Rsa-MIR171b

Basic info.

• miRNA locus ID
• Rsa-MIR171b

• miRNA locus accession
• PmiREN032077

• Organism
• Raphanus sativus

• Genomic location
• Rsa-Rsa1.0_00522.1  27921  28042  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

TT     AAA   --AAC   A      A             A     --   TA    TAGC
  GATGT   GGT     GCG GATATT GTGCGGTTCAATC AATAG  TCG  CTCT    
  |||||   |||     ||| |||||| ||||||||||||| |||||  |||  ||||     
  CTGTA   CCA     CGC CTATAA CGTGCCGAGTTAG TTGTT  GGC  GAGA    
AG     CAA   AAATA   A      C             C     TT   TA    TTAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference