Rsa-MIR171c

Basic info.

• miRNA locus ID
• Rsa-MIR171c

• miRNA locus accession
• PmiREN032078

• Organism
• Raphanus sativus

• Genomic location
• Rsa-Rsa1.0_00740.1  63320  63441  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  TATGATGTAA   AAC   A      A             A     --T  TA    TACT
            GGT   GCG GATATT GTGCGGTTCAATC AATAG   CG  CTCT    
            |||   ||| |||||| ||||||||||||| |||||   ||  ||||     
            CCA   TGC CTATAA CGTGCCGAGTTAG TTGTT   GC  GAGA    
ATAAAGGTAAAA   AAT   A      C             C     TTT  TA    TAGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference