Cca-MIR171a

Basic info.

• miRNA locus ID
• Cca-MIR171a

• miRNA locus accession
• PmiREN034139

• Organism
• Cuscuta campestris

• Genomic location
• Cca-Cp_v0.1_Contig174398  309  431  +

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

      TAAAAATG        CACGA      A                   TAA         T
              TACGTGTG     GATATT GTGCGGTTCAATGAGAAAG   AGCTCAAAA 
              ||||||||     |||||| |||||||||||||||||||   ||||||||| G
              GTGCGCGC     CTATAA CGTGCCGAGTTATTTTTTC   TCGAGTTTT 
ATTATTTAATGGTT        ----A      C                   TCC         T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference