Cca-MIR171b

Basic info.

• miRNA locus ID
• Cca-MIR171b

• miRNA locus accession
• PmiREN034140

• Organism
• Cuscuta campestris

• Genomic location
• Cca-Cp_v0.1_Contig407662  2301  2423  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

  TAAAAATGTACGTGT     A      A                   TAA         T
                 GCACG GATATT GTGCGGTTCAATGAGAAAG   GGCTCAAAA 
                 ||||| |||||| |||||||||||||||||||   ||||||||| G
                 CGTGC CTATAA CGTGCCGAGTTATTTTTTC   TCGAGTTTT 
ATTATTTAATAGTTTTG     A      C                   TCC         T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference