Pca-MIR171c

Basic info.

• miRNA locus ID
• Pca-MIR171c

• miRNA locus accession
• PmiREN045538

• Organism
• Pogostemon cablin

• Genomic location
• Pca-QKXD01009557.1  84  205  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

AT         AAT   ----   A                       A     C    CGTGT
  GTGGATACG   CAT    ACG GATATTGGTGTGGTTCAATTAGA AGCCG GCTC     
  |||||||||   |||    ||| ||||||||||||||||||||||| ||||| ||||      
  CATCTATGT   GTG    TGC CTATAACCGTGCCGAGTTAGTTT TTGGC CGAG     
           GTC   CTTA   A                       A     T    ATGAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference