Pca-MIR171d

Basic info.

• miRNA locus ID
• Pca-MIR171d

• miRNA locus accession
• PmiREN045539

• Organism
• Pogostemon cablin

• Genomic location
• Pca-QKXD01041152.1  81583  81698  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

     T        -    T  CA                   -A     ---AA    TA
 TTTC GAGAAGTA GACA GG  TGATATTGGTTCGGCTCAC  TTCGT     ACTG  
 |||| |||||||| |||| ||  |||||||||||||||||||  |||||     ||||   
 AAAG CTTTTTAT CTGT TC  ACTATAACCAAGCCGAGTG  GAGCA     TGGC  
A    T        T    T  TC                   GA     ATACA    AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference