Pca-MIR171f

Basic info.

• miRNA locus ID
• Pca-MIR171f

• miRNA locus accession
• PmiREN045541

• Organism
• Pogostemon cablin

• Genomic location
• Pca-QKXD01041529.1  3290805  3290926  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

     ATGTCGA     ATC     A                       A     C    AGTTT
            TACGA   ATACG GATATTGGTGCGGTTCAATTAGA AGCCG GCTC     
            |||||   ||||| ||||||||||||||||||||||| ||||| ||||      
            GTGCT   TATGC CTATAACCGTGCCGAGTTAGTTT TTGGC CGAG     
AATCTATGTGTC     ---     A                       A     T    ATGAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• No reference