Bol-MIR165b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
    - T  TT  -    A    A   TT      A           ATA      CAC  ACA        -     ACA
TAAG C AT  CA GTTG GGGG ATG  GTCTGG CCGAGGATATT   TATACA   GT   TATATATG TTGAT   
|||| | ||  || |||| |||| |||  |||||| |||||||||||   ||||||   ||   |||||||| |||||   A
GTTC G TA  GT CAAT CCCC TAC  CGGACC GGCTCTTATGA   ATATGT   TA   ATATATAC AGCTA   
    C T  TT  A    C    C   TT      A           GAG      --A  ---        T     GTG

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-101 Aly-MIR165a Aly-scaffold_1: 449084-449219 + Brassica oleracea Bol-MIR165b Bol-C08: 41197079-41197233 -
SY-486 Ath-MIR165a Ath-Chr1: 78912-79050 - Brassica oleracea Bol-MIR165b Bol-C08: 41197079-41197233 -
SY-766 Bol-MIR165a Bol-C05: 281079-281228 + Brassica oleracea Bol-MIR165b Bol-C08: 41197079-41197233 -
SY-770 Bol-MIR165b Bol-C08: 41197079-41197233 - Brassica rapa Bra-MIR165b Bra-A09: 44653661-44653815 -
SY-771 Bol-MIR165b Bol-C08: 41197079-41197233 - Brassica rapa Bra-MIR165d Bra-A10: 341341-341496 +
SY-772 Bol-MIR165b Bol-C08: 41197079-41197233 - Eutrema salsugineum Esa-MIR165 Esa-scaffold_5: 15258725-15258867 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Bol017514 0.5 NA NA
Bol017856 0.5 NA NA
Bol022567 0.5 NA NA
Bol035990 0.5 NA NA
Bol037848 0.5 NA NA
Bol019484 1.5 NA NA
Bol027381 1.5 NA NA
Bol035052 1.5 NA NA
Bol041327 1.5 NA NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference