Bol-MIR167b

Basic info.

• miRNA locus ID
• Bol-MIR167b

• miRNA locus accession
• PmiREN002338

• Organism
• Brassica oleracea

• Genomic location
• Bol-C04  13166957  13167087  +

• Comments
• A member of family MIR167

• Confidence level
• 

Secondary strurture and sequence

 TAT    CAC   -  T T A         C               --T   ---     C      G
    GGCG   CGG CA C G TGAAGCTGC AGCATGATCTAATTA   CTT   TCTTT TCCGTT 
    ||||   ||| || | | ||||||||| |||||||||||||||   |||   ||||| |||||| A
    CCGC   GTC GT G C ACTTTGACG TTGTACTAGATTAGT   GAG   AGAAA AGGTAG 
ATTC    TCT   A  T C C         C               TGT   TAC     -      C

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris. Mol Biol Rep, 2019
• >The auxin response factor gene family in allopolyploid Brassica napus. PLoS One, 2019
• >High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. BMC Genomics, 2013