Bol-MIR168c

Basic info.

• miRNA locus ID
• Bol-MIR168c

• miRNA locus accession
• PmiREN002342

• Organism
• Brassica oleracea

• Genomic location
• Bol-C09  7067563  7067703  -

• Comments
• A member of family MIR168

• Confidence level
• 

Secondary strurture and sequence

   GG     GG   T   G      C      -C   T     A      --G   G   CC    --     AT
     TTATC  CGG CTC GATTCG TTGGTG  AGG CGGGA CTGATT   GCT ACA  GCCA  CGTGG  
     |||||  ||| ||| |||||| ||||||  ||| ||||| ||||||   ||| |||  ||||  |||||   
     AGTGG  GCC GAG CTAAGT AACTAC  TCC GTCCT GGCTAG   CGA TGT  CGGT  GCACT  
ATAAA     -A   C   G      C      CT   -     A      GGA   G   -T    TG     TT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• No link
• No link

Reference

• >Identification and characterization of microRNAs in oilseed rape (Brassica napus) responsive to infection with the pathogenic fungus Verticillium longisporum using Brassica AA (Brassica rapa) and CC (Brassica oleracea) as reference genomes. New Phytol, 2014